CDS

Accession Number TCMCG007C39484
gbkey CDS
Protein Id XP_033129462.1
Location join(24060099..24060112,24060178..24060250,24060472..24060610,24060691..24060743)
Gene LOC117125760
GeneID 117125760
Organism Brassica rapa

Protein

Length 92aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA249065
db_source XM_033273571.1
Definition small nuclear ribonucleoprotein SmD1a [Brassica rapa]

EGGNOG-MAPPER Annotation

COG_category K
Description spliceosomal snRNP assembly
KEGG_TC -
KEGG_Module M00042        [VIEW IN KEGG]
M00351        [VIEW IN KEGG]
M00352        [VIEW IN KEGG]
M00354        [VIEW IN KEGG]
M00355        [VIEW IN KEGG]
M00398        [VIEW IN KEGG]
KEGG_Reaction R00731        [VIEW IN KEGG]
R02078        [VIEW IN KEGG]
R02363        [VIEW IN KEGG]
R02383        [VIEW IN KEGG]
R04693        [VIEW IN KEGG]
R04884        [VIEW IN KEGG]
KEGG_rclass RC00046        [VIEW IN KEGG]
RC00150        [VIEW IN KEGG]
RC00180        [VIEW IN KEGG]
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko00002        [VIEW IN KEGG]
ko01000        [VIEW IN KEGG]
ko03032        [VIEW IN KEGG]
ko03041        [VIEW IN KEGG]
ko04121        [VIEW IN KEGG]
KEGG_ko ko:K00505        [VIEW IN KEGG]
ko:K10645        [VIEW IN KEGG]
ko:K11087        [VIEW IN KEGG]
EC 1.14.18.1        [VIEW IN KEGG]        [VIEW IN INGREDIENT]
2.3.2.27        [VIEW IN KEGG]        [VIEW IN INGREDIENT]
KEGG_Pathway ko00350        [VIEW IN KEGG]
ko00950        [VIEW IN KEGG]
ko00965        [VIEW IN KEGG]
ko01100        [VIEW IN KEGG]
ko01110        [VIEW IN KEGG]
ko03040        [VIEW IN KEGG]
ko04916        [VIEW IN KEGG]
ko05322        [VIEW IN KEGG]
map00350        [VIEW IN KEGG]
map00950        [VIEW IN KEGG]
map00965        [VIEW IN KEGG]
map01100        [VIEW IN KEGG]
map01110        [VIEW IN KEGG]
map03040        [VIEW IN KEGG]
map04916        [VIEW IN KEGG]
map05322        [VIEW IN KEGG]
GOs GO:0000243        [VIEW IN EMBL-EBI]
GO:0000245        [VIEW IN EMBL-EBI]
GO:0000375        [VIEW IN EMBL-EBI]
GO:0000377        [VIEW IN EMBL-EBI]
GO:0000387        [VIEW IN EMBL-EBI]
GO:0000395        [VIEW IN EMBL-EBI]
GO:0000398        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003676        [VIEW IN EMBL-EBI]
GO:0003723        [VIEW IN EMBL-EBI]
GO:0003729        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005654        [VIEW IN EMBL-EBI]
GO:0005681        [VIEW IN EMBL-EBI]
GO:0005682        [VIEW IN EMBL-EBI]
GO:0005684        [VIEW IN EMBL-EBI]
GO:0005685        [VIEW IN EMBL-EBI]
GO:0005686        [VIEW IN EMBL-EBI]
GO:0005687        [VIEW IN EMBL-EBI]
GO:0005689        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0005829        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006376        [VIEW IN EMBL-EBI]
GO:0006396        [VIEW IN EMBL-EBI]
GO:0006397        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006810        [VIEW IN EMBL-EBI]
GO:0006913        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0008380        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010467        [VIEW IN EMBL-EBI]
GO:0016043        [VIEW IN EMBL-EBI]
GO:0016070        [VIEW IN EMBL-EBI]
GO:0016071        [VIEW IN EMBL-EBI]
GO:0022607        [VIEW IN EMBL-EBI]
GO:0022613        [VIEW IN EMBL-EBI]
GO:0022618        [VIEW IN EMBL-EBI]
GO:0030532        [VIEW IN EMBL-EBI]
GO:0031974        [VIEW IN EMBL-EBI]
GO:0031981        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0034622        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0034708        [VIEW IN EMBL-EBI]
GO:0034709        [VIEW IN EMBL-EBI]
GO:0034715        [VIEW IN EMBL-EBI]
GO:0034719        [VIEW IN EMBL-EBI]
GO:0035770        [VIEW IN EMBL-EBI]
GO:0036464        [VIEW IN EMBL-EBI]
GO:0043021        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043186        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043228        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043232        [VIEW IN EMBL-EBI]
GO:0043233        [VIEW IN EMBL-EBI]
GO:0043933        [VIEW IN EMBL-EBI]
GO:0044085        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044444        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0044877        [VIEW IN EMBL-EBI]
GO:0045292        [VIEW IN EMBL-EBI]
GO:0045495        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0046540        [VIEW IN EMBL-EBI]
GO:0046907        [VIEW IN EMBL-EBI]
GO:0051169        [VIEW IN EMBL-EBI]
GO:0051170        [VIEW IN EMBL-EBI]
GO:0051179        [VIEW IN EMBL-EBI]
GO:0051234        [VIEW IN EMBL-EBI]
GO:0051641        [VIEW IN EMBL-EBI]
GO:0051649        [VIEW IN EMBL-EBI]
GO:0060293        [VIEW IN EMBL-EBI]
GO:0065003        [VIEW IN EMBL-EBI]
GO:0070013        [VIEW IN EMBL-EBI]
GO:0070990        [VIEW IN EMBL-EBI]
GO:0071004        [VIEW IN EMBL-EBI]
GO:0071007        [VIEW IN EMBL-EBI]
GO:0071010        [VIEW IN EMBL-EBI]
GO:0071011        [VIEW IN EMBL-EBI]
GO:0071013        [VIEW IN EMBL-EBI]
GO:0071014        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0071826        [VIEW IN EMBL-EBI]
GO:0071840        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0097159        [VIEW IN EMBL-EBI]
GO:0097525        [VIEW IN EMBL-EBI]
GO:0097526        [VIEW IN EMBL-EBI]
GO:0120114        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901363        [VIEW IN EMBL-EBI]
GO:1902494        [VIEW IN EMBL-EBI]
GO:1990234        [VIEW IN EMBL-EBI]
GO:1990446        [VIEW IN EMBL-EBI]
GO:1990904        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGAAGCTCGTCAGGTTCTTGATTAAGTTGAATAACGATCGAGCTCAAGAACGGTACCCCGTCGTGTCGTCCCTGGCACTATCACTGACTGTGAAACTGACTCTCAAGGGGAAGAACCCTGTCACTTCTCGATCATCTAAGCTAGAGTGGGGGAACAATATCCGCTACTACATTCTCCTCGATAGTTTGAACCTTGTGAGTTTACTTGTAGAGAACACTCCTAGGGGGAAGGCTATTGGGCGTTGCAGAGGACGTGGTCGTGACAAAAGAGGTCGTTAG
Protein:  
MKLVRFLIKLNNDRAQERYPVVSSLALSLTVKLTLKGKNPVTSRSSKLEWGNNIRYYILLDSLNLVSLLVENTPRGKAIGRCRGRGRDKRGR